rs30999818 SNP Detail

Summary

• ID
  rs30999818
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:39302628 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GATAT AGGGAAACAG AAACAGTTGA
  S
  CAATTCCATC ACCAGTGTTA AATTG                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss44986096	mCV24532891	ABI	CRAMUS_MOUSE	f	SNP	G	C		G
ss60312164	NES15803720	PERLEGEN	MM_PANEL2	f	SNP		C	G		G		G	C	G		C
ss146374608	ENSMUSSNP1144172	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	C
ss325804089	CHEV_19_39388674	CHEVERUD	SCREENING_POP	f	SNP						C				C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30999818					SNP	G	C	G	G	G	C	G	C	G	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60312164	NES15803720	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:39302628 () rs orientation: forward

Symbol	Name	Function Class
Cyp2c29	cytochrome P450, family 2, subfamily c, polypeptide 29	within coordinates
Tssr156337	transcription start site region 156337	1296 bp upstream
Tssr156338	transcription start site region 156338	1330 bp upstream
Tssr156339	transcription start site region 156339	1355 bp upstream
Tssr156340	transcription start site region 156340	1455 bp upstream
Tssr156341	transcription start site region 156341	1504 bp upstream