rs31000311 SNP Detail

Summary

• ID
  rs31000311
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:44059557 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGACA GGCAAGAGAA TCAATTCAGG
  S
  CTTTGTAAGA GCAAATCTAG CCACA                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
ss44985722	mCV24575373	ABI	CRAMUS_MOUSE	f	SNP	G	C	G	C
ss146433211	ENSMUSSNP1336499	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	G
ss325817173	CHEV_19_44145608	CHEVERUD	SCREENING_POP	f	SNP					G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
rs31000311					SNP	G	C	G	C	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:44059557 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10883	CpG island 10883	944 bp distal
Erlin1	ER lipid raft associated 1	1333 bp upstream
Gm59010	predicted gene, 59010	within coordinates
Rr548150	regulatory region 548150	1248 bp distal
Rr548151	regulatory region 548151	857 bp distal
Rr548152	regulatory region 548152	620 bp distal
Tssr159429	transcription start site region 159429	1696 bp upstream
Tssr159430	transcription start site region 159430	1443 bp upstream
Tssr159431	transcription start site region 159431	1410 bp upstream
Tssr159432	transcription start site region 159432	1331 bp upstream