rs31000829 SNP Detail

Summary

• ID
  rs31000829
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:185154817 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAGTTAAGC TGTCTCTCCA
  GGCTCTACAG GGGTAATTTT ATTAGAGCAA ATTATTGTTG GTTTTTTGTT GTTGTTGTTG
  TTGTTGAAGA TAAGGTCTGT AGCTTGGATT GCCTTCACAC TTTAGGCTGG CCTTGGATTC
  CTGACTCTCC TGCTTCAGCC TCCCTAGTGC TATCACTCTT GGCTTAGCAG GAAAGTTCAG
  Y
  GACTTTTTAT TCACTTTCTA TCAATTTTGC ACATAAGGTT TATACTGAAT AGTTCATACT
  TAATTTATTT CTGTTTTTTG TTTTGTTTCT ATAATTTCTC ACTGAGGTGC ATGCTCATTA
  TAAAAAAGTT GTGACATATG AGAGCAAAAT TTCTTGTGGA AGCCACATCC AGGTAGAACT
  ACTAGGAATA TTCTGTGTGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss44986315	mCV24553182	ABI	CRAMUS_MOUSE	f	SNP		T	C				C		C
ss46731598	NES10639980	PERLEGEN	MM_PANEL2	f	SNP	T		C	T	C	C		C	C	C		T	C	T	C		C
ss146431975	ENSMUSSNP5332857	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C						C
ss320175624	CHEV_1_187246499	CHEVERUD	SCREENING_POP	f	SNP											T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31000829					SNP	T	T	C	T	C	C	C	C	C	C	T	T	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46731598	NES10639980	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:185154817 () rs orientation: forward

Symbol	Name	Function Class
Eprs1	glutamyl-prolyl-tRNA synthetase 1	Intron
Rr425383	regulatory region 425383	1554 bp distal