rs31001829 SNP Detail

Summary

• ID
  rs31001829
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:4920224 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATTCT GCAAAGCAAA GACAGGTAGA
  R
  ACAGTAGCCG GGCCACAGAT GGCAA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C57BL/6J	DBA/2J	KK/HlJ	LG/J	NOD/ShiLtJ	SM/J
ss44985838	mCV23230655	ABI	CRAMUS_MOUSE	f	SNP	A	A	G			A	G
ss50581864	NES13654124	PERLEGEN	MM_PANEL2	f	SNP	A		G	G	A			A		G
ss146008674	ENSMUSSNP966012	ENSEMBL	ENSEMBL_Sanger	f	SNP							G
ss325716159	CHEV_19_4870196	CHEVERUD	SCREENING_POP	f	SNP									G		G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C57BL/6J	DBA/2J	KK/HlJ	LG/J	NOD/ShiLtJ	SM/J
rs31001829					SNP	A	A	G	G	A	A	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50581864	NES13654124	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:4920224 () rs orientation: forward

Symbol	Name	Function Class
Actn3	actinin alpha 3	within coordinates
Tssr154367	transcription start site region 154367	800 bp downstream
Tssr154368	transcription start site region 154368	782 bp downstream
Tssr154369	transcription start site region 154369	880 bp upstream
Tssr157522	transcription start site region 157522	747 bp upstream