rs31002199 SNP Detail

Summary

• ID
  rs31002199
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:123061913 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTGTCTGCCT TTCTGTCCTC CGTTAGCAAG ACAGTGACCT
  CATCATACTC ATGGTTGCTA CTCGGAAGCT GAAGGTTTAA TATGAAAACA AAGCTAAATC
  R
  TGGATGTTAG TCTTCACGTT TGAAATTTGC ATGCCATTTC CAGAATAAAG AGATCCCACG
  TCTTACTTAG AAGGTATTAC TAATCTTTAC CTTAAACCA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	MSM/Ms	SM/J
ss45488741	mCV25366975	ABI	CRAMUS_MOUSE	f	SNP	A	G	A	G
ss135761737	ENSMUSSNP5047295	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G		G		G
ss320918510	CHEV_3_122971182	CHEVERUD	SCREENING_POP	f	SNP					A		G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	MSM/Ms	SM/J
rs31002199					SNP	A	G	A	G	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:123061913 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13776	CpG island 13776	52 bp distal
Gm56815	predicted gene, 56815	910 bp downstream
Gm66521	predicted gene, 66521	847 bp upstream
Rr77168	regulatory region 77168	within coordinates
Sec24d	SEC24 homolog D, COPII coat complex component	within coordinates
Tssr31542	transcription start site region 31542	1062 bp downstream
Tssr31543	transcription start site region 31543	1043 bp downstream
Tssr31544	transcription start site region 31544	764 bp downstream
Tssr31545	transcription start site region 31545	1428 bp upstream