rs31002878 SNP Detail

Summary

• ID
  rs31002878
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:125198645 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCCCT TTGCCTAGTG CAGGGAGCCA
  Y
  CTCTGGAGAA GAAGCAACAC TGTCC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45987046	mCV22303666	ABI	CRAMUS_MOUSE	f	SNP		T	C					T		C
ss60940119	NES16188574	PERLEGEN	MM_PANEL2	f	SNP	T		C	C	C	T	C		C	C	C	C		C	C	C	C		C
ss133614206	ENSMUSSNP1767107	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C							C
ss321938664	CHEV_6_125171700	CHEVERUD	SCREENING_POP	f	SNP													C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31002878					SNP	T	T	C	C	C	T	C	T	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60940119	NES16188574	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:125198645 () rs orientation: forward

Symbol	Name	Function Class
Rr368188	regulatory region 368188	505 bp upstream
Tssr58933	transcription start site region 58933	42 bp upstream
Tssr58934	transcription start site region 58934	143 bp upstream
Tssr58935	transcription start site region 58935	207 bp upstream
Vamp1	vesicle-associated membrane protein 1	within coordinates