rs31004009 SNP Detail

Summary

• ID
  rs31004009
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:90600938 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGTTTGCTCT GCTGACCACA AAGGGTGTGA TACAGTTGAT
  GGAGACTCAG ATAAAGTGAA AAGATCAAGA TGTGGTTGCT GACTATCATC TAGCTGCAAG
  R
  CTTGCACTCA CTTGCTGGGA CACCCTGGCT AAGCAGTACC CCTTTCCACA AACTGAGTAG
  TTCATGAGTA ACTTACGTTT GAGGTTCCTG TTTCCATGG                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45488260	mCV24983633	ABI	CRAMUS_MOUSE	f	SNP	G	G	G	G	A
ss135478680	ENSMUSSNP7227234	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G		A
ss320838593	CHEV_3_90497553	CHEVERUD	SCREENING_POP	f	SNP						G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31004009					SNP	G	G	G	G	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:90600938 () rs orientation: forward

Symbol	Name	Function Class
S100a9	S100 calcium binding protein A9 (calgranulin B)	Intron
Tssr949	transcription start site region 949	841 bp downstream
Tssr950	transcription start site region 950	710 bp upstream
Tssr951	transcription start site region 951	540 bp downstream
Tssr952	transcription start site region 952	1491 bp upstream
Tssr953	transcription start site region 953	1537 bp downstream
Tssr30268	transcription start site region 30268	993 bp downstream
Tssr30269	transcription start site region 30269	882 bp downstream
Tssr30270	transcription start site region 30270	734 bp downstream
Tssr34252	transcription start site region 34252	898 bp upstream
Tssr34253	transcription start site region 34253	766 bp upstream
Tssr34254	transcription start site region 34254	1323 bp downstream
Tssr34255	transcription start site region 34255	1418 bp downstream
Tssr34256	transcription start site region 34256	1493 bp downstream
Tssr34257	transcription start site region 34257	1553 bp downstream
Tssr34258	transcription start site region 34258	1614 bp downstream
Tssr34259	transcription start site region 34259	1741 bp downstream