rs31004474 SNP Detail

Summary

• ID
  rs31004474
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:30174816 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCATC TCCCTTCCTG CCCCTCCACT
  R
  CCGCAGTGGC TCCCCCGGGA GGGGG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45987250	mCV24692107	ABI	CRAMUS_MOUSE	f	SNP	A	A	G	A
ss133095174	ENSMUSSNP1494186	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
ss321776221	CHEV_6_30124817	CHEVERUD	SCREENING_POP	f	SNP					A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31004474					SNP	A	A	G	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:30174816 () rs orientation: forward

Symbol	Name	Function Class
BB283400	expressed sequence BB283400	1806 bp upstream
Cpgi17248	CpG island 17248	within coordinates
Mirc35hg	microRNA cluster 35, host gene	692 bp upstream
Rncr4	retina expressed non-coding RNA 4	within coordinates
Rr146074	regulatory region 146074	within coordinates
Tssr55327	transcription start site region 55327	1947 bp downstream
Tssr55328	transcription start site region 55328	440 bp upstream
Tssr55329	transcription start site region 55329	460 bp upstream
Tssr55330	transcription start site region 55330	508 bp upstream
Tssr55331	transcription start site region 55331	540 bp upstream
Tssr55332	transcription start site region 55332	563 bp upstream
Tssr55333	transcription start site region 55333	998 bp upstream
Tssr55334	transcription start site region 55334	1664 bp upstream
Tssr60107	transcription start site region 60107	738 bp upstream
Tssr60108	transcription start site region 60108	708 bp upstream
Tssr60109	transcription start site region 60109	681 bp upstream
Tssr60110	transcription start site region 60110	71 bp upstream
Tssr60111	transcription start site region 60111	916 bp downstream