rs31004906 SNP Detail

Summary

• ID
  rs31004906
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:91454616 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAATA GTATTGGTGC TGATGCAGCA
  Y
  GTACAGAGTT AGCCCAGAGA AAGCC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	SM/J	WSB/EiJ
ss44986581	mCV22872185	ABI	CRAMUS_MOUSE	f	SNP		C	T				T		C
ss60766619	NES16399422	PERLEGEN	MM_PANEL2	f	SNP	C		T	C	C	T		C	C	C	C		C	C		C
ss144946875	ENSMUSSNP4016521	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T						C
ss319840926	CHEV_1_93423471	CHEVERUD	SCREENING_POP	f	SNP												T			C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	SM/J	WSB/EiJ
rs31004906					SNP	C	C	T	C	C	T	T	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60766619	NES16399422	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:91454616 () rs orientation: forward

Symbol	Name	Function Class
Rr23655	regulatory region 23655	585 bp proximal
Rr28197	regulatory region 28197	623 bp distal
Traf3ip1	TRAF3 interacting protein 1	within coordinates
Tssr8094	transcription start site region 8094	1138 bp upstream