rs31005028 SNP Detail

Summary

• ID
  rs31005028
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:18793144 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATCTGTGGA AAATATGGCT
  ATCTTGCCAA GTGCAAGAGA AATTATAAGT GTCAAGGCTG GACAAACAAG GTACTAAAAA
  TTGTCTATTG CAGATTCAGA CATGGATTCT TTGAAGGAAC CACACCTCAA CCCAAGAGGG
  CAGCTGTTGC AGTATCCAGT TCATCTTGAG GGTTTCAGTC AGTCATAAAA TAAATGTTTG
  K
  GTTCCAATCA AAACAAACAA ACAATGACAA CAGAAAAGCA GCTGAAAACC TCAAATGATT
  GAATCCACAA GTAGACAAAT TAATCTCAAA AGAAGAATTA CAAATATATT ACCAATAAGT
  GCAAGACAAA ATATTCATCT TTATAAAGAG AATGTAAACC AAAAGTATAT TGAGATTCCA
  GCTCACTACA CTCCGAATGG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45986175	mCV23957256	ABI	CRAMUS_MOUSE	f	SNP		T	G					G		G
ss51246173	NES13802757	PERLEGEN	MM_PANEL2	f	SNP	T		G	G	G	G	G		G	G	G	G	T	G	G	G	G
ss133041144	ENSMUSSNP4063422	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	G							G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31005028					SNP	T	T	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51246173	NES13802757	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:18793144 () rs orientation: forward

Symbol	Name	Function Class
Gm43228	predicted gene 43228	31 bp downstream