rs31006297 SNP Detail

Summary

• ID
  rs31006297
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:103684219 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATTTT ACATACAAAG GTATGAGCTG
  R
  GGAAAAACAA CATCTGTAAA GATTG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45489902	mCV22763088	ABI	CRAMUS_MOUSE	f	SNP	A	G	A	A
ss135564169	ENSMUSSNP2220813	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G
ss320858424	CHEV_3_103580826	CHEVERUD	SCREENING_POP	f	SNP					A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31006297					SNP	A	G	A	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:103684219 () rs orientation: forward

Symbol	Name	Function Class
Gm15886	predicted gene 15886	within coordinates
Hipk1	homeodomain interacting protein kinase 1	within coordinates
Rr69881	regulatory region 69881	819 bp distal
Rr69882	regulatory region 69882	382 bp proximal
Rr367513	regulatory region 367513	1096 bp upstream
Tssr34850	transcription start site region 34850	92 bp upstream
Tssr34851	transcription start site region 34851	1232 bp downstream
Tssr34852	transcription start site region 34852	1253 bp downstream
Tssr34853	transcription start site region 34853	1285 bp downstream
Tssr34854	transcription start site region 34854	1354 bp downstream
Tssr34855	transcription start site region 34855	1406 bp downstream