rs31007039 SNP Detail

Summary

• ID
  rs31007039
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:105284680 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAGGC TAGAACGACT GGGACTGGCC
  R
  AGGTGGTGAC CCAGCTGCGG CTCTG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss44987095	mCV25150602	ABI	CRAMUS_MOUSE	f	SNP	G	A	G
ss319882713	CHEV_1_107253532	CHEVERUD	SCREENING_POP	f	SNP				G	G
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31007039					SNP	G	A	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:105284680 () rs orientation: forward

Symbol	Name	Function Class
Cpgi626	CpG island 626	within coordinates
Gm17634	predicted gene, 17634	within coordinates
Rnf152	ring finger protein 152	245 bp upstream
Rr416387	regulatory region 416387	938 bp distal
Rr416388	regulatory region 416388	296 bp distal
Rr416389	regulatory region 416389	907 bp distal
Rr416390	regulatory region 416390	375 bp distal
Rr416391	regulatory region 416391	213 bp distal
Rr416392	regulatory region 416392	within coordinates
Tssr8255	transcription start site region 8255	187 bp downstream
Tssr8256	transcription start site region 8256	169 bp downstream
Tssr8257	transcription start site region 8257	98 bp downstream
Tssr8258	transcription start site region 8258	104 bp upstream
Tssr13126	transcription start site region 13126	439 bp upstream
Tssr13127	transcription start site region 13127	304 bp upstream
Tssr13128	transcription start site region 13128	241 bp upstream
Tssr13129	transcription start site region 13129	167 bp upstream
Tssr13130	transcription start site region 13130	within coordinates