rs31007308 SNP Detail

Summary

• ID
  rs31007308
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:87404366 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCTAT TTCCAATCTG CAATTGCCAT
  R
  TGCTACTTAA GCAGAAACAG CCATC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45986484	mCV24930615	ABI	CRAMUS_MOUSE	f	SNP		A	A				G		A
ss51740635	NES14797039	PERLEGEN	MM_PANEL2	f	SNP	A			G	G	A		A	A	G		A	A	A	A		G
ss133363446	ENSMUSSNP5277854	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A						A
ss321849194	CHEV_6_87377378	CHEVERUD	SCREENING_POP	f	SNP											G					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31007308					SNP	A	A	A	G	G	A	G	A	A	G	G	A	A	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51740635	NES14797039	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:87404366 () rs orientation: forward

Symbol	Name	Function Class
Bmp10	bone morphogenetic protein 10	1610 bp upstream
D6Mit9	DNA segment, Chr 6, Massachusetts Institute of Technology 9	1350 bp distal
Gm66434	predicted gene, 66434	within coordinates
Tssr57543	transcription start site region 57543	1602 bp upstream
Tssr57544	transcription start site region 57544	1692 bp upstream