rs31008939 SNP Detail

Summary

• ID
  rs31008939
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:55293133 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGCCA CAGTGGGCGT GTACTTCTCT
  S
  TGCAGTTAGG GCAGAAAGAC ACCAG                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
ss39244757	mCV25266520	ABI	CRAMUS_MOUSE	f	SNP	G	G	G	C
ss139576712	ENSMUSSNP5572937	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G
ss324641935	CHEV_14_55674513	CHEVERUD	SCREENING_POP	f	SNP					G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
rs31008939					SNP	G	G	G	C	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:55293133 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6483	CpG island 6483	1408 bp distal
Rr492410	regulatory region 492410	1041 bp distal
Rr492411	regulatory region 492411	173 bp distal
Rr492412	regulatory region 492412	269 bp distal
Rr492413	regulatory region 492413	within coordinates
Tssr125745	transcription start site region 125745	1751 bp downstream
Tssr125746	transcription start site region 125746	801 bp downstream
Tssr125747	transcription start site region 125747	within coordinates
Tssr125748	transcription start site region 125748	173 bp upstream