rs31009697 SNP Detail

Summary

• ID
  rs31009697
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:152586174 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGATACCATA TGGAATCCAA
  GAGGTAATTC TAACCTTTTA TTCTCTCCTA CCACACTGGA GCAAGAGTAA ATTGAATCGC
  TGTCTGAAAA GAGCCAGCTG TGCGAGTTTA CTTCCCTTTC ATAGCCACTG CATCTAAGTA
  GTTACAAGAA AATGTTGCAT GGAAATGATT CTAAACTAAT TTCCATTCCA CACGTGAGAA
  Y
  ACCGCCTCCC CCTGTAAGAG GCTGCCTGTT ACTTATGCGG GGCAGAGCCT TCAGATGCTG
  TCCCCAGGTA GGTAATTCAC ACGGCGGAGG CTGTTCCATA TTCTGCAGTG TATAATTACA
  AAAGAGAGTT TCATCTTCAC ACATTTCACA CACATTAGTC ACGGAACTTT CGATGCCGCT
  GGATTGCCGA TGGATAACTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45489947	mCV25265467	ABI	CRAMUS_MOUSE	f	SNP	C	C	C	T	T
ss136104276	ENSMUSSNP1244427	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C		T
ss321029025	CHEV_3_152543501	CHEVERUD	SCREENING_POP	f	SNP						C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31009697					SNP	C	C	C	T	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:152586174 () rs orientation: forward

Symbol	Name	Function Class
Rr66444	regulatory region 66444	574 bp distal
Rr79922	regulatory region 79922	within coordinates
St6galnac5	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 5	within coordinates