rs31009952 SNP Detail

Summary

• ID
  rs31009952
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:10584095 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TATAG CTTTGTTGAG TGTGTGAAGC
  R
  AGACATTGAG GTGCTTCATT TGGTG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss44986942	mCV23007543	ABI	CRAMUS_MOUSE	f	SNP		A	G					A		G
ss50601254	NES13643024	PERLEGEN	MM_PANEL2	f	SNP	A		G	G	G	A	G		G	G	G	G		G	G	A	G		G
ss146043936	ENSMUSSNP6370771	ENSEMBL	ENSEMBL_Sanger	f	SNP			G							G
ss325720708	CHEV_19_10681221	CHEVERUD	SCREENING_POP	f	SNP													G					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31009952					SNP	A	A	G	G	G	A	G	A	G	G	G	G	G	G	G	A	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50601254	NES13643024	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:10584095 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10615	CpG island 10615	678 bp distal
Ddb1	damage specific DNA binding protein 1	within coordinates
Gm59162	predicted gene, 59162	within coordinates
Rr362968	regulatory region 362968	within coordinates
Rr405857	regulatory region 405857	1075 bp downstream
Tkfc	triokinase, FMN cyclase	1077 bp upstream
Tssr155068	transcription start site region 155068	1177 bp downstream
Tssr155069	transcription start site region 155069	1117 bp downstream
Tssr155070	transcription start site region 155070	1087 bp downstream
Tssr155071	transcription start site region 155071	1036 bp downstream
Tssr155072	transcription start site region 155072	783 bp downstream
Tssr155073	transcription start site region 155073	443 bp downstream
Tssr155074	transcription start site region 155074	1061 bp upstream
Tssr155075	transcription start site region 155075	1516 bp upstream
Tssr158204	transcription start site region 158204	1326 bp upstream
Tssr158205	transcription start site region 158205	1265 bp upstream
Tssr158206	transcription start site region 158206	1261 bp upstream
Tssr158207	transcription start site region 158207	816 bp upstream