rs31010057 SNP Detail

Summary

• ID
  rs31010057
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:38104911 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCTGA CAGCCATTGG TTTGATGGTG
  Y
  GGCCATTCAC TTCCTCTCTG GCTGC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss44987402	mCV27587539	ABI	CRAMUS_MOUSE	f	SNP	C	T	C
ss146361545	ENSMUSSNP1210370	ENSEMBL	ENSEMBL_Sanger	f	SNP	C		C
ss325801277	CHEV_19_38190953	CHEVERUD	SCREENING_POP	f	SNP				C	C
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31010057					SNP	C	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:38104911 () rs orientation: forward

Symbol	Name	Function Class
Rbp4	retinol binding protein 4, plasma	166 bp downstream
Tssr156244	transcription start site region 156244	287 bp upstream
Tssr156245	transcription start site region 156245	1852 bp upstream
Tssr159111	transcription start site region 159111	310 bp downstream
Tssr159112	transcription start site region 159112	349 bp downstream
Tssr159113	transcription start site region 159113	404 bp downstream
Tssr159114	transcription start site region 159114	1844 bp downstream
Tssr159115	transcription start site region 159115	1883 bp downstream
Tssr159116	transcription start site region 159116	1919 bp downstream