rs31011459 SNP Detail

Summary

• ID
  rs31011459
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:12743581 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTCAA CCATGGGGCC TTCCTGGTAG
  Y
  TACAGGATGT GGAAGGCACT GTTTA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss44987896	mCV23019270	ABI	CRAMUS_MOUSE	f	SNP	C	C	C				C		T
ss50620924	NES13638005	PERLEGEN	MM_PANEL2	f	SNP	C		C	C	C	T		C		C	C	C	C	C	C	C
ss146065413	ENSMUSSNP4963828	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C						T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31011459					SNP	C	C	C	C	C	T	C	C	T	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50620924	NES13638005	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:12743581 () rs orientation: forward

Symbol	Name	Function Class
Cntf	ciliary neurotrophic factor	585 bp upstream
Gm44505	predicted readthrough transcript (NMD candidate), 44505	within coordinates
Tssr158445	transcription start site region 158445	774 bp upstream
Tssr158446	transcription start site region 158446	732 bp upstream
Tssr158447	transcription start site region 158447	1537 bp downstream
Zfp91	zinc finger protein 91	803 bp downstream