rs31011688 SNP Detail

Summary

• ID
  rs31011688
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:85699675 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        CATAT GACCTTATTG GGGCCATTCT
  Y
  ACTCTGACCA CTACTACACA AATAG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss46468837	mCV25193487	ABI	CRAMUS_MOUSE	f	SNP	T	C	T	C
ss148467973	ENSMUSSNP7221381	ENSEMBL	ENSEMBL_Sanger	r	SNP	A			G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs31011688					SNP	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:85699675 () rs orientation: reverse

Symbol	Name	Function Class
Adamts5	ADAM metallopeptidase with thrombospondin type 1 motif 5	1662 bp upstream
Cpgi8392	CpG island 8392	1477 bp distal
Gm46558	predicted gene, 46558	within coordinates
Gm60185	predicted gene, 60185	1429 bp upstream
Rr325517	regulatory region 325517	674 bp distal
Tssr141920	transcription start site region 141920	1716 bp upstream
Tssr141921	transcription start site region 141921	1654 bp upstream
Tssr141922	transcription start site region 141922	1425 bp upstream
Tssr141923	transcription start site region 141923	959 bp upstream