rs31012986 SNP Detail

Summary

• ID
  rs31012986
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:3038032 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  CATATTCCAG GTCCTACAGT GTGCATTTCT CATTTTTCTC GTTTTTCAGT GATTTAGTCA
  TTTTTCAAGT CGTCAGGTGG ATGTTTCTAA TTTTCCATTA TTTTCAGTTT TCTTACCACA
  CTCCACGTCC TACAGTTTGA CATTTCTAAA TTTTCCACCT TTTTCAGTTT TCCTGGCCAT
  ATTTCATGTC CTAAAGTGTG TATTTCTCAT TTTCCGTGAT TTTCAGTTTT CTCGCAATAT
  TCCAGGTCCT ACAGTTTGCA TTTCTCATTT TCCACGATTT CCAGTGATTT CGTCATTTTT
  M
  AAGTCGTCAA GTGGATGTTT CTCATTTTCC GTGATTTTCA GTTTTCTCGC CATATTCCAG
  GTAGTGTGCA TTTCTCATTT TTCTCGTTTT TCAGTGATTT AGTCATTTTT CAAGTCGTCA
  AGTGGATGTT TCTCATTTTC CATGATTTTC AGTTTTCTTG CCATATTCCA TGTCCTATAG
  TGGACATTTC TAAATTTTCC ACCGTTTTCA GTGTTCCTCG CCATATTTCA CGTCCTAAAG
  TGTGTATTTC TCATTTTCCG TGATTTTCAC TTTTCTAGCC ATATTCCAGG TCCTGCAGTG
                                                                   
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss46468449	mCV23031319	ABI	CRAMUS_MOUSE	f	SNP	A	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs31012986					SNP	A	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:3038032 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21328	CpG island 21328	1443 bp distal
Cpgi21329	CpG island 21329	within coordinates
Mir101c	microRNA 101c	637 bp downstream
Tssr83600	transcription start site region 83600	1934 bp downstream
Tssr83601	transcription start site region 83601	1689 bp downstream
Tssr83602	transcription start site region 83602	1645 bp downstream
Tssr83603	transcription start site region 83603	1631 bp downstream
Tssr83604	transcription start site region 83604	677 bp downstream
Tssr83605	transcription start site region 83605	within coordinates
Tssr83606	transcription start site region 83606	150 bp upstream
Tssr88026	transcription start site region 88026	1904 bp upstream
Tssr88027	transcription start site region 88027	1659 bp upstream
Tssr88028	transcription start site region 88028	1635 bp upstream
Tssr88029	transcription start site region 88029	12 bp downstream
Tssr88030	transcription start site region 88030	151 bp downstream