rs31013379 SNP Detail

Summary

• ID
  rs31013379
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:58779683 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GACCAAAATC CCTCATCTGT TATGGTTTGA ATGTAAAGTG
  TGTCTCCACA GGCTTGTACA TTTGAAACTT GGCCCATGAT GCTGTTTGGG GGAGGTTGTG
  R
  AAGTGGGGTC TGGCTGCAGG AAGTGGGTGA CTGAAGGCGG GCTTTAAGGT TTATAGACAA
  GTACCACTTC CTGTCCTCTC TCTGCTTCTT GATCCATCA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss44987726	mCV25117191	ABI	CRAMUS_MOUSE	f	SNP	A	A	G	A
ss146567804	ENSMUSSNP7182434	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A		A
ss325872827	CHEV_19_58865741	CHEVERUD	SCREENING_POP	f	SNP					A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31013379					SNP	A	A	G	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:58779683 () rs orientation: forward

Symbol	Name	Function Class
Gm17150	predicted gene 17150	676 bp downstream
Gm56672	predicted gene, 56672	80 bp upstream
Spmip5	sperm microtubule inner protein 5	within coordinates
Tssr159974	transcription start site region 159974	1543 bp downstream
Tssr159975	transcription start site region 159975	1566 bp downstream