rs31016029 SNP Detail

Summary

• ID
  rs31016029
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:146371768 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

             GCTCACCACT CTACACTGCT TTGGAAGATC ATGGGATGTC TCCTTGAATC
  R
  TGGATATGTT TCTCTCACAC TCATCTTGCT TCATTAACTT TCCTCTGGTA           
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss49693538	NES12968928	PERLEGEN	MM_PANEL2	f	SNP	G		G	G	G	A	G	G	G	G	G	A		G	G	G
ss145658715	ENSMUSSNP6431188	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G						G				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs31016029					SNP	G	G	G	G	G	A	G	G	G	G	G	A	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49693538	NES12968928	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:146371768 () rs orientation: forward

Symbol	Name	Function Class
Brinp3	bone morphogenetic protein/retinoic acid inducible neural specific 3	mRNA-UTR
Cpgi840	CpG island 840	1335 bp proximal
Cpgi841	CpG island 841	1836 bp proximal
Gm29514	predicted gene 29514	868 bp upstream
Rr372193	regulatory region 372193	670 bp upstream
Rr420040	regulatory region 420040	1260 bp distal
Rr420041	regulatory region 420041	1090 bp distal
Rr420042	regulatory region 420042	332 bp distal
Rr420043	regulatory region 420043	1265 bp proximal
Rr420044	regulatory region 420044	1668 bp proximal
Tssr9214	transcription start site region 9214	424 bp downstream
Tssr9215	transcription start site region 9215	394 bp downstream
Tssr9216	transcription start site region 9216	351 bp downstream
Tssr9217	transcription start site region 9217	337 bp downstream
Tssr9218	transcription start site region 9218	323 bp downstream
Tssr9219	transcription start site region 9219	1641 bp upstream