rs31016030 SNP Detail

Summary

• ID
  rs31016030
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:146371089 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTACTGAAA GCAATTGCCT
  TAAACACAGG CTGCATGATT TAACGAGGAA GTGGGACCTA GGAAGGCTGC TGCCGCCTAG
  GTAACCCATC ATCAGCCTCT TGGTCATCTT GCTAACCCTC CAAAGCATAG CGCCCTCGAA
  AACTCTGAGT GACTACGACC TTCAACCATT CACCTCCCAG CCCCTGTCTA TGCAAAAAAA
  R
  TCGCTGAGGA TTAGATCAAT GCAATGGGAC CGGTCCTGCT GGTTTATTTG GGCTGTGTGT
  TAAGTCGATT TTCTTACTAT GCCTGGATCA GTTTCTGCAA GGGAAAGGAT TCCAAGGAAG
  TGCTAGTGAA ATGCACTGAT GGAATACTAT TAATCCTAAT GATAACATTC CCAGTGCAGG
  TAAACTCTGA AAAGAACTGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49693539	NES12968927	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31016030					SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49693539	NES12968927	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:146371089 () rs orientation: forward

Symbol	Name	Function Class
Brinp3	bone morphogenetic protein/retinoic acid inducible neural specific 3	mRNA-UTR
Gm29514	predicted gene 29514	189 bp upstream
Rr372193	regulatory region 372193	1349 bp upstream
Rr420040	regulatory region 420040	581 bp distal
Rr420041	regulatory region 420041	411 bp distal
Rr420042	regulatory region 420042	within coordinates
Rr420043	regulatory region 420043	1944 bp proximal
Tssr9214	transcription start site region 9214	248 bp upstream
Tssr9215	transcription start site region 9215	270 bp upstream
Tssr9216	transcription start site region 9216	293 bp upstream
Tssr9217	transcription start site region 9217	336 bp upstream
Tssr9218	transcription start site region 9218	347 bp upstream