ATTTAACGAG GAAGTGGGAC CTAGGAAGGC TGCTGCCGCC TAGGTAACCC ATCATCAGCC TCTTGGTCAT CTTGCTAACC CTCCAAAGCA TAGCGCCCTC R AAAACTCTGA GTGACTACGA CCTTCAACCA TTCACCTCCC AGCCCCTGTC TATGCAAAAA AAATCGCTGA GGATTAGATC AATGCAATGG GACCGGTCCT R = A/G Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | 129S1/SvImJ |
A/J |
AKR/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
C3H/HeJ |
CAST/EiJ |
DBA/2J |
FVB/NJ |
KK/HlJ |
MOLF/EiJ |
NOD/ShiLtJ |
NZW/LacJ |
WSB/EiJ |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ss49693540 | NES12968926 | PERLEGEN | MM_PANEL2 | f | SNP | G | G | G | G | G | G | G | G | G | G | A | G | G | G |
SNP Consensus Information | |||||||||||||||||||
SNP | Consensus Type | 129S1/SvImJ |
A/J |
AKR/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
C3H/HeJ |
CAST/EiJ |
DBA/2J |
FVB/NJ |
KK/HlJ |
MOLF/EiJ |
NOD/ShiLtJ |
NZW/LacJ |
WSB/EiJ |
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rs31016031 | SNP | G | G | G | G | G | G | G | G | G | G | A | G | G | G |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type |
Alleles |
---|---|---|---|---|---|---|
ss49693540 | NES12968926 | PERLEGEN | MM_PANEL | f | SNP | A/G |
Location: Chr1:146371026 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
Brinp3 | bone morphogenetic protein/retinoic acid inducible neural specific 3 | mRNA-UTR | ||||||
Gm29514 | predicted gene 29514 | 126 bp upstream | ||||||
Gm69681 | predicted gene, 69681 | 1946 bp downstream | ||||||
Rr372193 | regulatory region 372193 | 1412 bp upstream | ||||||
Rr420040 | regulatory region 420040 | 518 bp distal | ||||||
Rr420041 | regulatory region 420041 | 348 bp distal | ||||||
Rr420042 | regulatory region 420042 | within coordinates | ||||||
Tssr9214 | transcription start site region 9214 | 311 bp upstream | ||||||
Tssr9215 | transcription start site region 9215 | 333 bp upstream | ||||||
Tssr9216 | transcription start site region 9216 | 356 bp upstream | ||||||
Tssr9217 | transcription start site region 9217 | 399 bp upstream | ||||||
Tssr9218 | transcription start site region 9218 | 410 bp upstream |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 03/25/2025 MGI 6.24 |
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