rs31016032 SNP Detail

Summary

• ID
  rs31016032
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:146370940 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTGCCCTAAC ATCTAGCTTC TTGTAGCATG GTCTTTAGCG
  CAGGGGCTCA GTACTGAAAG CAATTGCCTT AAACACAGGC TGCATGATTT AACGAGGAAG
  Y
  GGGACCTAGG AAGGCTGCTG CCGCCTAGGT AACCCATCAT CAGCCTCTTG GTCATCTTGC
  TAACCCTCCA AAGCATAGCG CCCTCGAAAA CTCTGAGTGA                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	WSB/EiJ
ss49693541	NES12968925	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	C	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	WSB/EiJ
rs31016032					SNP	T	T	T	C	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49693541	NES12968925	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:146370940 () rs orientation: forward

Symbol	Name	Function Class
Brinp3	bone morphogenetic protein/retinoic acid inducible neural specific 3	mRNA-UTR
Gm29514	predicted gene 29514	40 bp upstream
Gm69681	predicted gene, 69681	1860 bp downstream
Rr372193	regulatory region 372193	1498 bp upstream
Rr420040	regulatory region 420040	432 bp distal
Rr420041	regulatory region 420041	262 bp distal
Rr420042	regulatory region 420042	within coordinates
Tssr9214	transcription start site region 9214	397 bp upstream
Tssr9215	transcription start site region 9215	419 bp upstream
Tssr9216	transcription start site region 9216	442 bp upstream
Tssr9217	transcription start site region 9217	485 bp upstream
Tssr9218	transcription start site region 9218	496 bp upstream