rs31016033 SNP Detail

Summary

• ID
  rs31016033
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:146370939 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TCGTGCACC CCTCCTACCC CACCCCCAGT
  GGACCAGGGA CAGTTCTCGG ACTGCCCTAA CATCTAGCTT CTTGTAGCAT GGTCTTTAGC
  GCAGGGGCTC AGTACTGAAA GCAATTGCCT TAAACACAGG CTGCATGATT TAACGAGGAA
  K
  TGGGACCTAG GAAGGCTGCT GCCGCCTAGG TAACCCATCA TCAGCCTCTT GGTCATCTTG
  CTAACCCTCC AAAGCATAGC GCCCTCGAAA ACTCTGAGTG ACTACGACCT TCAACCATTC
  ACCTCCCAGC CCCTGTCTAT GCAAAAAAAA                                 
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss45030590	mCV23565591	ABI	CRAMUS_MOUSE	f	SNP		G					G		T
ss49693542	NES12968924	PERLEGEN	MM_PANEL2	f	SNP	T	G	T	G	G	G		G	T	G	T		G	G	T		G
ss320018564	CHEV_1_148342331	CHEVERUD	SCREENING_POP	f	SNP												T				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs31016033					SNP	T	G	T	G	G	G	G	G	T	G	T	T	G	G	T	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49693542	NES12968924	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:146370939 () rs orientation: forward

Symbol	Name	Function Class
Brinp3	bone morphogenetic protein/retinoic acid inducible neural specific 3	mRNA-UTR
Gm29514	predicted gene 29514	39 bp upstream
Gm69681	predicted gene, 69681	1859 bp downstream
Rr372193	regulatory region 372193	1499 bp upstream
Rr420040	regulatory region 420040	431 bp distal
Rr420041	regulatory region 420041	261 bp distal
Rr420042	regulatory region 420042	within coordinates
Tssr9214	transcription start site region 9214	398 bp upstream
Tssr9215	transcription start site region 9215	420 bp upstream
Tssr9216	transcription start site region 9216	443 bp upstream
Tssr9217	transcription start site region 9217	486 bp upstream
Tssr9218	transcription start site region 9218	497 bp upstream