rs31016218 SNP Detail

Summary

• ID
  rs31016218
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:126189472 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTTGCCATC TCTCCAGCTC
  TGTTTCTTGT GTTTGTTTAT TTTACAGAAT CTTCCTCTAT AGTTACAGTG TGGCCTTGAA
  ATCACAATTC TCCTGCCTCA ACCAACCAAG TGTTTGAGAC GACAGGAATG CATCACCACA
  CTTGGCGTAC TAGATTTAAA AAAAAAAAAC TATTAAATTT ATTTTATGTG TATGAGTGTT
  Y
  TGCCTGTGTG TATGTGCACC ACTTACCAAG TGCCAAGGAG CAGAGAAAAG GCGTCAGATA
  CCCTAGAACT GGAGTTACAG ATGGTTGTGA AATGGTTGAG TTGCTGGGGA TTGGACCCAA
  GTCCTCGGGA AGAGCAGCCA GTGCTGTAAA CGACGGGACT TTCTCTCCAG CCCCCTTACC
  TGTCTGTCTG TCTGTCTGTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
ss45988673	mCV22750519	ABI	CRAMUS_MOUSE	f	SNP	C	T	C	C
ss145874732	ENSMUSSNP3348421	ENSEMBL	ENSEMBL_Sanger	f	SNP		T		C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
rs31016218					SNP	C	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:126189472 () rs orientation: forward

Symbol	Name	Function Class
Apobr	apolipoprotein B receptor	1188 bp downstream
Il27	interleukin 27	within coordinates
Tssr69041	transcription start site region 69041	873 bp downstream
Tssr74771	transcription start site region 74771	1124 bp upstream
Tssr74772	transcription start site region 74772	1051 bp upstream
Tssr74773	transcription start site region 74773	1027 bp upstream
Tssr74774	transcription start site region 74774	996 bp upstream
Tssr74775	transcription start site region 74775	894 bp upstream
Tssr74776	transcription start site region 74776	885 bp upstream
Tssr74777	transcription start site region 74777	836 bp upstream
Tssr74778	transcription start site region 74778	455 bp upstream
Tssr74779	transcription start site region 74779	216 bp upstream
Tssr74780	transcription start site region 74780	44 bp upstream