rs31016480 SNP Detail

Summary

• ID
  rs31016480
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:3027591 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  GTTTCTTATT TTCCATGATT TTCAGTTTTC TGGCCATATT CCATGTCCTA CAGCGGAGAT
  TTCTAAATTT TCCAATTTTT TCAGTTTTCC TTGTCATATT TCACGTCCTA AAGTGTGTAT
  TTCTCATTTT CCTTGATTTT CAGTTTTCTC GCCATATTCC AGGTCCTACA GTGTGCATTT
  CTCATTTTTC ACGTTTTTCA GTGATTTCGT CATTTTTCAA GTGGTCAAGT GGTTGTTTCT
  CAGTTTCCAT GATTTACAGT TTTCTTGCCA TATTCCATTT CCTACAGTGG ACATTTCTAA
  M
  TTTTCCACCT TTTTCAGTTT TCCTCGCCAT ATTTCACGTC CTAAAGTGTG TATTTCTCAT
  TTTTCGTTAT TTTCAGTTTT CTCGCCATAT TCCAGATCCT ACAGTGTGCA TTTCTCGTTT
  TTCACGTTTT TCAGTGATTT CGTCATTTTT TAAGTCGTCA AGTGAATGTT TCTCATTTTT
  CATGATTTTC AGTTTTCTTG CCATATTCAA TGTCCTACAG CGGGACATTT CTAAATTTCC
  CACCTTTTTC AGTTTTCCTC GCCATTTTTC ATGTCCTAAA GTGTGTATTT CTCATTTTCC
                                                                   
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	DBA/2J
ss46468581	mCV23016393	ABI	CRAMUS_MOUSE	f	SNP	A	C
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	DBA/2J
rs31016480					SNP	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:3027591 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21323	CpG island 21323	1683 bp distal
Cpgi21324	CpG island 21324	411 bp distal
Cpgi21325	CpG island 21325	1796 bp proximal
Rr673606	regulatory region 673606	1061 bp distal
Rr673607	regulatory region 673607	581 bp distal
Rr673608	regulatory region 673608	within coordinates
Rr673609	regulatory region 673609	290 bp proximal
Rr673610	regulatory region 673610	1290 bp proximal
Tssr83580	transcription start site region 83580	1963 bp downstream
Tssr83581	transcription start site region 83581	1718 bp downstream
Tssr83582	transcription start site region 83582	1096 bp downstream
Tssr83583	transcription start site region 83583	909 bp downstream
Tssr83584	transcription start site region 83584	822 bp downstream
Tssr83585	transcription start site region 83585	446 bp downstream
Tssr83586	transcription start site region 83586	123 bp downstream
Tssr83587	transcription start site region 83587	164 bp upstream
Tssr83588	transcription start site region 83588	1780 bp upstream
Tssr88019	transcription start site region 88019	871 bp upstream
Tssr88020	transcription start site region 88020	803 bp upstream
Tssr88021	transcription start site region 88021	179 bp upstream
Tssr88022	transcription start site region 88022	103 bp upstream
Tssr88023	transcription start site region 88023	1811 bp downstream