rs31016806 SNP Detail

Summary

• ID
  rs31016806
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:140587847 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  GGGCTTCAGA GGTGTGGCCT GTGGGAGTCA GAGGTGTGGC CTGTGGGAGT CAGAGGTGTG
  GCCTGTGGGC TTCAGAGGTG TGGCCTGTGG GCTTCAGAGG TGTGGCCTGT GGGCTTCAGA
  GGTGTGGCCT GTGGGAGCAA TGGATCACTG AGACCTTTAC CTACTTGGCT GATTAATCCA
  TCGATGGCTT AATGGGCTGT TGGGAGGTGG TGGAAACTTC AGGAGCTGCC ACCGGAGGAA
  GTAGGCCACT GGGAGGGTGC CTTTGAATGG GGACACTTGT TCTGGTCCCC TTTGCTTTCC
  W
  GCCAGCTTGG AGAGAACAGG TAGCTTGGTC GCAGGCTCCC TGCTTATCAA GGTGACCCGG
  AGGTCAAACC CTCAGAGCTC TAAGCCAAAA TAAACCTGTC ATTATGTAAG TTGCTTTTCT
  CAGTGATGGT TTATCACAGC AATGGAAAGC TGAGTGAACC AAGCCCACAA AGGAGGGATT
  CTACTCACCC TCAGACCGGA GGGGGCTCCC TCAAGACAAA CTGGTCTCTC CCAGAGGTAG
  CTGGGAGGAA TATAGGGAGC CCTGGGTCTC AGTTGTGAGA CCCCCCCCCA CACACACACA
                                                                   
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss46469270	mCV22971560	ABI	CRAMUS_MOUSE	f	SNP	A	A	A	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs31016806					SNP	A	A	A	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:140587847 () rs orientation: forward

Symbol	Name	Function Class
Rr377299	regulatory region 377299	1855 bp upstream