rs31017064 SNP Detail

Summary

• ID
  rs31017064
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:146369756 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATAACCATT CACAAGTGGG
  TGTGCTATAG ACTTTGGGCA AGCCAGAAAT CTTTATCACG ACCAGCAAAT ATTCAATTGG
  GACAGTGGAT CAGATATACG AATTGGAACT AAGATACATA CTTAATAAAA TATTTCTAAT
  GTTATCTTTC CTGTAAGATG GGGTAAAACA ACCAATAGCA TTATTACTAT AGCTGAAACA
  R
  TATTAATTTT AAAACAGAGC TAGCTAAAGT GTGCTTATAG TATATTTAAC ATGAGCTGCT
  ACACCAAAAT TCACATCATT TCCAGAAAAG AAAGAGTTAA AGGTGAGAGG AATCCTTAAG
  AAACCAAAGA TACTTTACCT GTGAGTATTT TTATACAAGA TAGGAAGGAC CTTAAAATGT
  TGATATTGTT TCCAAAGCGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss49693543	NES12968923	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs31017064					SNP	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49693543	NES12968923	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:146369756 () rs orientation: forward

Symbol	Name	Function Class
Brinp3	bone morphogenetic protein/retinoic acid inducible neural specific 3	1611 bp upstream
Gm29514	predicted gene 29514	within coordinates
Gm69681	predicted gene, 69681	676 bp downstream
Rr420040	regulatory region 420040	204 bp proximal
Rr420041	regulatory region 420041	753 bp proximal
Rr420042	regulatory region 420042	923 bp proximal
Tssr9214	transcription start site region 9214	1581 bp upstream
Tssr9215	transcription start site region 9215	1603 bp upstream
Tssr9216	transcription start site region 9216	1626 bp upstream
Tssr9217	transcription start site region 9217	1669 bp upstream
Tssr9218	transcription start site region 9218	1680 bp upstream