rs31017065 SNP Detail

Summary

• ID
  rs31017065
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:146369218 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TACTTGAGC ACACATATTT CAATTTGTTT
  CAGATGCATG GCACTTGGCT CTCTTCCTTT CTTTATGTTA TAGTACAGAC TTCTATAATG
  ATGGTTATCA TAAATTTGTT TTTAATCAAT AGAATTTCAA TATATATTTA TGTTGAGAAT
  R
  AAGTCCTCAT GTTTGCAAAA GACATGCATG TTTACACTAA TTAGCGTATC TTTTATTATT
  GAAATTTGGA GATAAGGTAC CACACTAGGA TTAACAACAG AGAAAAATTA ATATACATGT
  TTTGACAGTG AAACATATTT GGTAATTCAA                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	SM/J	WSB/EiJ
ss45122092	mCV23565592	ABI	CRAMUS_MOUSE	f	SNP		A	G				G		A
ss49693544	NES12968922	PERLEGEN	MM_PANEL2	f	SNP	A		G	G	G	G		A		G		G	G		G
ss145658709	ENSMUSSNP4256147	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G						A
ss320018563	CHEV_1_148340610	CHEVERUD	SCREENING_POP	f	SNP											A			A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	SM/J	WSB/EiJ
rs31017065					SNP	A	A	G	G	G	G	G	A	A	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49693544	NES12968922	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:146369218 () rs orientation: forward

Symbol	Name	Function Class
Gm29514	predicted gene 29514	within coordinates
Gm69681	predicted gene, 69681	138 bp downstream
Rr420040	regulatory region 420040	742 bp proximal
Rr420041	regulatory region 420041	1291 bp proximal
Rr420042	regulatory region 420042	1461 bp proximal