rs31017066 SNP Detail

Summary

• ID
  rs31017066
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:146369207 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGAAAGCTA CATCACAAAA
  TGTTTGTGTT TTGCAGTCTT TGACAGTAAT AAACACTACA GATACTTGAG CACACATATT
  TCAATTTGTT TCAGATGCAT GGCACTTGGC TCTCTTCCTT TCTTTATGTT ATAGTACAGA
  CTTCTATAAT GATGGTTATC ATAAATTTGT TTTTAATCAA TAGAATTTCA ATATATATTT
  M
  TGTTGAGAAT GAAGTCCTCA TGTTTGCAAA AGACATGCAT GTTTACACTA ATTAGCGTAT
  CTTTTATTAT TGAAATTTGG AGATAAGGTA CCACACTAGG ATTAACAACA GAGAAAAATT
  AATATACATG TTTTGACAGT GAAACATATT TGGTAATTCA AAATTGCAAT GCTTTCTATT
  TGGCATCATC GTGTAATACT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	FVB/NJ
ss49693545	NES12968920	PERLEGEN	MM_PANEL2	f	SNP	A	A	C	A
SNP Consensus Information
SNP					Consensus Type	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	FVB/NJ
rs31017066					SNP	A	A	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49693545	NES12968920	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:146369207 () rs orientation: forward

Symbol	Name	Function Class
Gm29514	predicted gene 29514	within coordinates
Gm69681	predicted gene, 69681	127 bp downstream
Rr420040	regulatory region 420040	753 bp proximal
Rr420041	regulatory region 420041	1302 bp proximal
Rr420042	regulatory region 420042	1472 bp proximal