rs31017067 SNP Detail

Summary

• ID
  rs31017067
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:146369152 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAAATTTTC TACTTTGTCA
  GAGCATTCAG GACAGTGTGC ATCCTGAAAA GAAAAAGGAA AGCTACATCA CAAAATGTTT
  GTGTTTTGCA GTCTTTGACA GTAATAAACA CTACAGATAC TTGAGCACAC ATATTTCAAT
  TTGTTTCAGA TGCATGGCAC TTGGCTCTCT TCCTTTCTTT ATGTTATAGT ACAGACTTCT
  R
  TAATGATGGT TATCATAAAT TTGTTTTTAA TCAATAGAAT TTCAATATAT ATTTATGTTG
  AGAATGAAGT CCTCATGTTT GCAAAAGACA TGCATGTTTA CACTAATTAG CGTATCTTTT
  ATTATTGAAA TTTGGAGATA AGGTACCACA CTAGGATTAA CAACAGAGAA AAATTAATAT
  ACATGTTTTG ACAGTGAAAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss49693546	NES12968918	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	G	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs31017067					SNP	A	A	A	G	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49693546	NES12968918	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:146369152 () rs orientation: forward

Symbol	Name	Function Class
Gm29514	predicted gene 29514	within coordinates
Gm69681	predicted gene, 69681	72 bp downstream
Rr420040	regulatory region 420040	808 bp proximal
Rr420041	regulatory region 420041	1357 bp proximal
Rr420042	regulatory region 420042	1527 bp proximal