rs31018324 SNP Detail

Summary

• ID
  rs31018324
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:34686563 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        GGCGC CATGTAAGTT TTCTGTGGTG
  K
  TGGATTGTCC CATATCAGAT AAGTC                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	C57BL/6J	DBA/2J	LG/J	SM/J
ss46469908	mCV22857442	ABI	CRAMUS_MOUSE	f	SNP	G	G	G	T
ss146174469	ENSMUSSNP720154	ENSEMBL	ENSEMBL_Sanger	r	SNP		C		A
ss321075206	CHEV_4_34633812	CHEVERUD	SCREENING_POP	r	SNP					C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	C57BL/6J	DBA/2J	LG/J	SM/J
rs31018324					SNP	G	G	G	T	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:34686563 () rs orientation: reverse

Symbol	Name	Function Class
Cfap206	cilia and flagella associated protein 206	1996 bp downstream
Cpgi14121	CpG island 14121	215 bp proximal
Rr100808	regulatory region 100808	within coordinates
Rr398199	regulatory region 398199	660 bp upstream
Slc35a1	solute carrier family 35 (CMP-sialic acid transporter), member 1	within coordinates
Tssr41193	transcription start site region 41193	699 bp downstream
Tssr41194	transcription start site region 41194	749 bp downstream
Tssr41195	transcription start site region 41195	784 bp downstream
Tssr41196	transcription start site region 41196	819 bp downstream
Tssr41197	transcription start site region 41197	894 bp downstream