rs31018775 SNP Detail

Summary

• ID
  rs31018775
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:29980799 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GTTGAGGTAT GCAACGGTGT CCCCACCACT AGAATGTCAG
  CCCCTCCCTG AAGCCAACAA ATTTTATCCC ATTTCCTGTT ATTCCTAGGT TGCTAGACTA
  R
  TGCCTAACAC ATACTATTGT CCATCAAATG TTTGTTGGAA GGGTTTGATT TTTAGCCCAG
  AAGTCTGTTG GGGTTTGGGA AGCGTCGCAC AAACCGCTT                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss46469640	mCV22974769	ABI	CRAMUS_MOUSE	f	SNP	A	A	G	G
ss148672340	ENSMUSSNP38087	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G	G
ss322132952	CHEV_7_31066393	CHEVERUD	SCREENING_POP	f	SNP					A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs31018775					SNP	A	A	G	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:29980799 () rs orientation: forward

Symbol	Name	Function Class
1700020L13Rik	RIKEN cDNA 1700020L13 gene	within coordinates
Cpgi18786	CpG island 18786	354 bp distal
Rr400235	regulatory region 400235	807 bp downstream
Rr644765	regulatory region 644765	1265 bp distal
Rr644766	regulatory region 644766	1310 bp distal
Rr644767	regulatory region 644767	477 bp distal
Rr644768	regulatory region 644768	within coordinates
Rr644769	regulatory region 644769	471 bp proximal
Rr644770	regulatory region 644770	862 bp proximal
Tssr65667	transcription start site region 65667	1232 bp downstream
Tssr65668	transcription start site region 65668	1186 bp downstream
Tssr65669	transcription start site region 65669	790 bp downstream
Tssr71721	transcription start site region 71721	950 bp upstream
Wdr62	WD repeat domain 62	955 bp upstream