rs31021608 SNP Detail

Summary

• ID
  rs31021608
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:3027662 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  CCACCTTTAT CAGTTTTCCT CACCATATTT CACGTCCTAA AGTGTGTATT TCTCATTTTC
  TGTGATTTTC AGTTTTCTCG CCATATTCCA GGTCCTACAG TGTGCATTTC TAAATTTTCA
  AGTTTTTCAG TGATTTCGTC ATTTTTCAAG TCGTCAAGTG GATGTTACTC ATTTTCCATG
  ATTTTCAGTT TTCTTGACAA TTTCCATGTC CTACAGTGGA CATTTCTAAA TTTTCCACCT
  TTTTCAGTTT TCCTCGCCAT ATTTCACGAC CTAAAGTGGG TATTACTCAT TTTCCGGGAT
  W
  TTCAGTTTTC TCGCCATCCT CCAGGTCCTA CAGTGTGCAT TTCTCATTTT TCACGTTTTT
  CAGTGATTTC GTCATTTTTC AAGTCGTCAA GTGGATGTTT CTCATTTTAC ATGATTTTCA
  GTTTTCTTGC CATATTCCAT GTCCTACAGT GGACATTTCT AAATTCTCCA ACTTTTTCAG
  TTTTCGTCGC CATATTTCAC GTCCTAAAGT GTGTATTTCT CATTTTCCGT GATTTTCAAT
  TTTCTCGCCA CATTCCAGGT CCTACAGTGT GCATTTATCA TTTTTCACGT TTTTCAGTGA
                                                                   
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss46470423	mCV23010693	ABI	CRAMUS_MOUSE	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs31021608					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:3027662 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21323	CpG island 21323	1754 bp distal
Cpgi21324	CpG island 21324	482 bp distal
Cpgi21325	CpG island 21325	1725 bp proximal
Rr673606	regulatory region 673606	1132 bp distal
Rr673607	regulatory region 673607	652 bp distal
Rr673608	regulatory region 673608	2 bp distal
Rr673609	regulatory region 673609	219 bp proximal
Rr673610	regulatory region 673610	1219 bp proximal
Tssr83581	transcription start site region 83581	1789 bp downstream
Tssr83582	transcription start site region 83582	1167 bp downstream
Tssr83583	transcription start site region 83583	980 bp downstream
Tssr83584	transcription start site region 83584	893 bp downstream
Tssr83585	transcription start site region 83585	517 bp downstream
Tssr83586	transcription start site region 83586	194 bp downstream
Tssr83587	transcription start site region 83587	93 bp upstream
Tssr83588	transcription start site region 83588	1709 bp upstream
Tssr83589	transcription start site region 83589	1993 bp upstream
Tssr88019	transcription start site region 88019	942 bp upstream
Tssr88020	transcription start site region 88020	874 bp upstream
Tssr88021	transcription start site region 88021	250 bp upstream
Tssr88022	transcription start site region 88022	174 bp upstream
Tssr88023	transcription start site region 88023	1740 bp downstream