rs31021757 SNP Detail

Summary

• ID
  rs31021757
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:146236340 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    AGAAAGAAA ATTGAGCAAT ATAAACCATT
  TACATAATCT AAAATATGTG ATTATTTAAT GGTGGTAGGG CAGCTATCTT ATTGTTGCTC
  TTACCTGGAG AATAAAATGA AAAAGAATGT TTGATAGGTA AATAAAGATA AGGAATTTCA
  M
  AAGGTTATAT TGTAGGTTTT TGGTGACAGT GAAATTTTTT TTAAGTTATT TTTCAAGTTA
  CCAATTTAAC TCTTAAGGAA TTTGTTCCTT TTATGAAATG TGGCAGATGG TTCAAAATTA
  GCATGCTCTA CCATTATAAT TTTAATTTTT                                 
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss49693989	NES12971360	PERLEGEN	MM_PANEL2	f	SNP	A		C	A	C	C	C	A	A	C	A		C	C	A	C		C
ss145656507	ENSMUSSNP1175331	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	C
ss320018065	CHEV_1_148207732	CHEVERUD	SCREENING_POP	f	SNP												A					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31021757					SNP	A	A	C	A	C	C	C	A	A	C	A	A	C	C	A	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49693989	NES12971360	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:146236340 () rs orientation: forward

Symbol	Name	Function Class
Rr420039	regulatory region 420039	683 bp distal