rs31021760 SNP Detail

Summary

• ID
  rs31021760
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:146236190 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TACCTGTGT ACCTGCAGTT ATTCTGCTGA
  GTCAGCATAT TATTTATTTT AACATAATTT GAGGGACAAT AAAATTTCAT ATATAAGACT
  TTGGAGAAAC AAATGTATAA CAACATATAT ATTAACTGGG GCTCAAAATA GTTTTGTGTC
  Y
  AGAAAGAAAA TTGAGCAATA TAAACCATTT ACATAATCTA AAATATGTGA TTATTTAATG
  GTGGTAGGGC AGCTATCTTA TTGTTGCTCT TACCTGGAGA ATAAAATGAA AAAGAATGTT
  TGATAGGTAA ATAAAGATAA GGAATTTCAC                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss49693992	NES12971357	PERLEGEN	MM_PANEL2	f	SNP	T		C	T	C	T	C	T	T	C	T		T	C	T	T		C
ss145656503	ENSMUSSNP3848381	ENSEMBL	ENSEMBL_Sanger	f	SNP		T
ss320018064	CHEV_1_148207582	CHEVERUD	SCREENING_POP	f	SNP												T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31021760					SNP	T	T	C	T	C	T	C	T	T	C	T	T	T	C	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49693992	NES12971357	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:146236190 () rs orientation: forward

Symbol	Name	Function Class
Rr420039	regulatory region 420039	533 bp distal