rs31021762 SNP Detail

Summary

• ID
  rs31021762
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:146236017 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GGAGAGATG CTTAGTATTA TTTAATTGTG
  ATGAGTTTAA CTATTACAGA ATTTCAATCA CTGAATAACA GAAAATGAGA AGCAGTTCAT
  GGATcacaca cacacacaca cacacacaca cCAGTGCTAC TAATCATCTA GAGTAAATCA
  R
  TGGAGTACTG GATATCAGAA ACTTACCTGT GTACCTGCAG TTATTCTGCT GAGTCAGCAT
  ATTATTTATT TTAACATAAT TTGAGGGACA ATAAAATTTC ATATATAAGA CTTTGGAGAA
  ACAAATGTAT AACAACATAT ATATTAACTG                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss49693994	NES12971355	PERLEGEN	MM_PANEL2	f	SNP	G		A	G	A	G	A	G	G	A	G		G	A	G	G		A
ss145656492	ENSMUSSNP4577814	ENSEMBL	ENSEMBL_Sanger	f	SNP		G
ss320018062	CHEV_1_148207409	CHEVERUD	SCREENING_POP	f	SNP												G					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31021762					SNP	G	G	A	G	A	G	A	G	G	A	G	G	G	A	G	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49693994	NES12971355	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:146236017 () rs orientation: forward

Symbol	Name	Function Class
Rr420039	regulatory region 420039	360 bp distal