rs31022511 SNP Detail

Summary

• ID
  rs31022511
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:146234596 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTTGGAAGT GGGGAAGGAA
  GTAGAAGCAG ACTGTGGTAG CTCTTTGATT TAAACTCACT CAGGACTCAG TCAAGTTGAC
  TAGCTCAGGC CACACAAAGG CTCAGAATGA TGCTTATCAG TATGTGGGGA AGGGGAGTTG
  CTACAAAACA GCATCTAGAT TTGCACATTA CATTCTTTCA GATACTTTAT TTTAGGAAAA
  Y
  CCAACTGAGA AGATTATAAT TCTCTGTCCA ATATATTTGC ATAAAAACAA TGTACATGTC
  AGTTTAGGTG AGGCAATGGT ATTTGGAGCT GGACTTTCTA AACTCAAATT GCAACCAACA
  TATATGCTAT TGGGATTTTA ATAGATAAAA TAACTTTCAT CTCATTTATT CCTTCTAAAA
  TATTGGGAAC ATCCACATCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49694003	NES12971342	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31022511					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49694003	NES12971342	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:146234596 () rs orientation: forward

Symbol	Name	Function Class
Rr420039	regulatory region 420039	863 bp proximal