rs31022512 SNP Detail

Summary

• ID
  rs31022512
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:146234394 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAACAGACAA CATTGGAATC
  CAAGTAGCCC TGGCACAGCA AAGCTTCCCT GAGGAGAATT CAGGAATCAG GGTCAGACAG
  CATGGTGAAG TTTTTGAAGA GAATCAGAGC ACATGTAGCA AAAGGAGAGA GCCTCTTCTT
  ACATCTTTTG TGGAAAAGGG GGCAGTGAGC ATGGCAACAA ATTGCAGGTT CTCTGATTTC
  S
  AGGTTGGAAG TGGGGAAGGA AGTAGAAGCA GACTGTGGTA GCTCTTTGAT TTAAACTCAC
  TCAGGACTCA GTCAAGTTGA CTAGCTCAGG CCACACAAAG GCTCAGAATG ATGCTTATCA
  GTATGTGGGG AAGGGGAGTT GCTACAAAAC AGCATCTAGA TTTGCACATT ACATTCTTTC
  AGATACTTTA TTTTAGGAAA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49694004	NES12971340	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	G	C	C	C	C	C	G	C	C	G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31022512					SNP	C	C	C	C	G	C	C	C	C	C	G	C	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49694004	NES12971340	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:146234394 () rs orientation: forward

Symbol	Name	Function Class
Rr420039	regulatory region 420039	1065 bp proximal