rs31023821 SNP Detail

Summary

• ID
  rs31023821
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:34686742 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                                                   
  GCTGCTCCTC CCGATGGCGA GCCGTCTGGC CAGGGCTGTG GTGGCTGTCC TTTCAGGTTT
  TACGTAAGCT GGCCCCAAGG CTGAGGTTTT ATTCTATAGC ACTGTGGCTA GGACAGGCCA
  AAAGGCGGTG ACGATTTTGT ATTTATTTAT TTTTAAAGCA GGAACCAACA CTACATGGTC
  TCATTCTATA GCCCACGTTG GCTTCAAACT CGGGGAGATT TTCCTGCCTC AGTTTTACAA
  GCGCTGGGAT TAGTGGTCTG TGCCCTCATG CCTGGCGACA ACGTCGCTTT TTTTTTTTTT
  W
  AATTTTGTTT GTTTGTTTTT GTTTTTTCAC CATTTCCCCA ATGAGCACTG GCTTTAAGTC
  TAAATAAATG TTGGACAAGC ATTTAAAGAA TATCCTTTTG CGTGGATGTG AAATTATTTA
  TCTTTGGGGG AGGGGATTTG ACATTTAACA TCAGGCGCCA TGTAAGTTTT CTGTGGTGGT
  GGATTGTCCC ATATCAGATA AGTCCTGTAG CATCCGGGAA GAGGGTAATA GGAAAAGTAG
  GGCGATTGAC AAATGAACAC TTAAAAGATG CAGCAGGCAG ATCGGTACCC GCAAGGGTTG
                                                                   
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss46471039	mCV22857437	ABI	CRAMUS_MOUSE	f	SNP	T	T	A	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs31023821					SNP	T	T	A	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:34686742 () rs orientation: reverse

Symbol	Name	Function Class
Cfap206	cilia and flagella associated protein 206	1817 bp downstream
Cpgi14121	CpG island 14121	36 bp proximal
Rr100808	regulatory region 100808	within coordinates
Rr398199	regulatory region 398199	481 bp upstream
Slc35a1	solute carrier family 35 (CMP-sialic acid transporter), member 1	within coordinates
Tssr41193	transcription start site region 41193	520 bp downstream
Tssr41194	transcription start site region 41194	570 bp downstream
Tssr41195	transcription start site region 41195	605 bp downstream
Tssr41196	transcription start site region 41196	640 bp downstream
Tssr41197	transcription start site region 41197	715 bp downstream