rs31025912 SNP Detail

Summary

• ID
  rs31025912
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:9306766 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGAAATGACA AAATGAGAAG AAGAACTGTC CCCAGAATGA
  GATGTGCTTT TTGTATACAC CAAAAGCTTG GCTCCTAGAG GCAGGTGCCT ACAGGACCTT
  Y
  ACTGCTGGGC CAGTTAGTGT AGGCAGTGGA TTAGAACATT TAAGAGGAGA TGATTTCAAG
  GCTGTGACAG GAAATTGCCA ACTGCTTGTA GCTCATTTT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46472021	mCV22743180	ABI	CRAMUS_MOUSE	f	SNP		C					C		T
ss46815004	NES10969856	PERLEGEN	MM_PANEL2	f	SNP	T	C	C	C	T	T		C	T	T	C	C	C	C	T
ss134086355	ENSMUSSNP190649	ENSEMBL	ENSEMBL_Sanger	f	SNP		C							T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31025912					SNP	T	C	C	C	T	T	C	C	T	T	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46815004	NES10969856	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:9306766 () rs orientation: forward

Symbol	Name	Function Class
Cybb	cytochrome b-245, beta polypeptide	within coordinates
Rr406085	regulatory region 406085	20 bp upstream
Rr689864	regulatory region 689864	775 bp proximal
Tssr162909	transcription start site region 162909	581 bp upstream
Tssr162910	transcription start site region 162910	534 bp upstream
Tssr162911	transcription start site region 162911	496 bp upstream