rs31027439 SNP Detail

Summary

• ID
  rs31027439
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:95562436 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCTAA GCTGGCCAGG AGGTGGGTGA
  R
  CTCCAGCCTC TAAGCTTGAT GTCTT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J
ss45490508	mCV23592585	ABI	CRAMUS_MOUSE	f	SNP	G	A	G
ss135512488	ENSMUSSNP4044900	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J
rs31027439					SNP	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:95562436 () rs orientation: forward

Symbol	Name	Function Class
Gm64625	predicted gene, 64625	1301 bp upstream
Gm65002	predicted gene, 65002	799 bp downstream
Rr366848	regulatory region 366848	within coordinates
Rr580999	regulatory region 580999	1244 bp distal
Rr581000	regulatory region 581000	969 bp distal
Tssr971	transcription start site region 971	1328 bp upstream
Tssr30620	transcription start site region 30620	1362 bp downstream
Tssr30621	transcription start site region 30621	1218 bp downstream
Tssr30622	transcription start site region 30622	1201 bp downstream
Tssr30623	transcription start site region 30623	1192 bp downstream
Tssr30624	transcription start site region 30624	1048 bp upstream
Tssr34506	transcription start site region 34506	1400 bp upstream