rs31028362 SNP Detail

Summary

• ID
  rs31028362
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:47888535 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  CAAATATATC GGGAAAATTC CTCAAGTGTA TTAAACACTT TAATATCACA AAGGAAACCC
  AGTATATAAT CCTTTCTTGA TTCATTGTCA GCATTATGGA AAGCCGTTGG TTTGTTTTAT
  TTTATTGGTA TATTTCTATG ATCTCCCTAA GTATTAGCAG CCTCTTTCTC TGATATAGTT
  TCCCCCTAAA CAAATCTAAT AAGCAAAATC CACACAAACC CCTCACCCCC GAGCAGTGTA
  CAGGCTTGCT AGTTTGTAGG TTTTGATCTT TTGTTAGATT TTGATAAAGA CCTAACAAGG
  Y
  TTATTCTGAG GCTCAGCTTC TAGAGGACGC ATGGTAAGAT TGACCGTCAG TCAGTCTTTA
  GCTGGAATTT TACTTGAAGT CTTTGGAGGA TGTATCGTTT TTCCAGGGAG GGACTCACTG
  GGGTCAGCCA GAAACTTGAG CATGCCATAT ATACTTTTGA CACCTCTAGC CCTCGAATAT
  GTATTTTTGT TTGTATGCCT ACTATGCTTT TTTTGTTTAT GGCCAAACTT TTAATTAAAA
  AGATTTTTTC AATACTTTGT AAAAAATAAA AATTAGTAAA CTCAGTGGTT CCAGGAGAGT
                                                                   
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J
ss39246213	mCV23875062	ABI	CRAMUS_MOUSE	f	SNP	T	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J
rs31028362					SNP	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:47888535 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6388	CpG island 6388	919 bp distal
Ktn1	kinectin 1	within coordinates
Rr297095	regulatory region 297095	334 bp distal
Tssr125323	transcription start site region 125323	1958 bp downstream
Tssr125324	transcription start site region 125324	1689 bp downstream
Tssr125325	transcription start site region 125325	689 bp downstream
Tssr128337	transcription start site region 128337	1814 bp upstream