rs31028404 SNP Detail

Summary

• ID
  rs31028404
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:172301834 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCATT ACTGGCATTG GGAATCCTGC
  W
  GATGTCAACT TCATTGCCTC CAGGA                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss44988601	mCV23005047	ABI	CRAMUS_MOUSE	f	SNP	A	A	T	A
ss120011346	PARCsnp_1.19751	PARC_SEQ	INBRED	f	SNP			T	A
ss120014413	PARCsnp_1.09782	PARC_SEQ	INBRED	f	SNP			T	A
ss146193200	ENSMUSSNP6581674	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A		A
ss320125592	CHEV_1_174404398	CHEVERUD	SCREENING_POP	f	SNP					A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31028404					SNP	A	A	T	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:172301834 () rs orientation: forward

Symbol	Name	Function Class
Gm7804	predicted gene 7804	within coordinates
Gm70809	predicted gene, 70809	within coordinates
Gm70814	predicted gene, 70814	within coordinates
Rr396588	regulatory region 396588	929 bp downstream
Rr423578	regulatory region 423578	799 bp proximal
Slamf9	SLAM family member 9	1093 bp upstream
Tssr10198	transcription start site region 10198	1104 bp upstream
Tssr10199	transcription start site region 10199	1120 bp upstream
Tssr10200	transcription start site region 10200	1160 bp upstream
Tssr15219	transcription start site region 15219	898 bp downstream