rs31029029 SNP Detail

Summary

• ID
  rs31029029
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:185416487 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATTCATCCAT TCATTCGTTT CCATTTTATG TTATTGTGAG
  TGTGGTGTGT TTTTATGTGA TATGTGTGTG TGTGTGTGTA TGAATGTCCA CCCCCTTCTG
  Y
  ATGTATGTGA ATACATTCAT GTGTGTGCAC AGTGTCCAGG TATGGTGGAG GTCAGAGATC
  ACCCCTGGGA ATCTTCTTCA ATCACTTTCT ACTTTATCT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	DBA/2J	LG/J	SM/J
ss44988717	mCV23607327	ABI	CRAMUS_MOUSE	f	SNP	T	C
ss146440059	ENSMUSSNP313938	ENSEMBL	ENSEMBL_Sanger	f	SNP		C
ss320178627	CHEV_1_187508169	CHEVERUD	SCREENING_POP	f	SNP			T	C
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	DBA/2J	LG/J	SM/J
rs31029029					SNP	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:185416487 () rs orientation: forward

Symbol	Name	Function Class
Rr425420	regulatory region 425420	1730 bp distal
Rr425422	regulatory region 425422	508 bp proximal
Rr425423	regulatory region 425423	696 bp proximal