rs31029257 SNP Detail

Summary

• ID
  rs31029257
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:165955684 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGCTGATTCT CAGACATTGA TGTTTAGCAG TGGGTTTAGA
  ACAGGCTCAT GCTGTGACAC AAGGACCTAG AGAAAACCAT CTCCCGCAGG AGGCTGGCTC
  Y
  TCAAAGCACT TTCTGAAAAT AATCCAAATC AGCACATTTG GAACGAACTT AACTTTACCT
  CATAGCATCT TGGAGGAAGC CTAGGAAAGG AAAATACCA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss44988325	mCV23028198	ABI	CRAMUS_MOUSE	f	SNP	C	C	C	C	T
ss146013169	ENSMUSSNP7014221	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C		T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs31029257					SNP	C	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:165955684 () rs orientation: forward

Symbol	Name	Function Class
Rr28891	regulatory region 28891	within coordinates
Rr372394	regulatory region 372394	949 bp downstream
Styxl2	serine/threonine/tyrosine interacting like 2	217 bp upstream
Tssr9858	transcription start site region 9858	1115 bp downstream
Tssr14809	transcription start site region 14809	1255 bp upstream
Tssr14810	transcription start site region 14810	894 bp upstream
Tssr14811	transcription start site region 14811	211 bp upstream
Tssr14812	transcription start site region 14812	195 bp upstream
Tssr14813	transcription start site region 14813	174 bp upstream