rs31029272 SNP Detail

Summary

• ID
  rs31029272
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:146204816 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTCAGTTCC CCAGTCCTCT
  AACTGCCATC TTCCAGCCTC AGTTTTCGTA TTCTTTACAC ATATAATTTC ATTTCGTTTC
  ATTTTTTTTT TCCAAGAAAT CCAGGGAGCG TTTTAACTTC GGCAGTTTAA ACGGCTTGCC
  CAAGCACACC AGGGCTAAAT TCAAACCCAA GTTTCTTAGA TGGTCACTGT TAAGGACTGG
  S
  TAAAACCCCA AACTGATATT AACTGCTCAG TAACGCGATG TGTTGGCCCA GAGCAAACCA
  TGTCATTTTT CTCAGTATCC CAAAGAAACA GCACTCACGA CGAACCTCCT GTTTAGAGAT
  GTTAGGTCTC AACAGGACTA ATTTAAATCT TACTAAACTT TTGAGTCCTT CTGAAAACCC
  CTCTGGGGTT CATCAGTTAC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss45490535	mCV25041057	ABI	CRAMUS_MOUSE	f	SNP	G	C	G
ss136044822	ENSMUSSNP6467884	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	C	G
ss321010537	CHEV_3_146162025	CHEVERUD	SCREENING_POP	f	SNP				C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs31029272					SNP	G	C	G	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:146204816 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13920	CpG island 13920	276 bp proximal
Gng5	G protein subunit gamma 5	775 bp upstream
Rr77342	regulatory region 77342	within coordinates
Rr398118	regulatory region 398118	1331 bp upstream
Spata1	spermatogenesis associated 1	within coordinates
Tssr32351	transcription start site region 32351	644 bp upstream
Tssr32352	transcription start site region 32352	767 bp upstream
Tssr32353	transcription start site region 32353	789 bp upstream
Tssr32354	transcription start site region 32354	1010 bp upstream
Tssr32355	transcription start site region 32355	1070 bp upstream
Tssr32356	transcription start site region 32356	1100 bp upstream
Tssr32357	transcription start site region 32357	1128 bp upstream
Tssr36036	transcription start site region 36036	660 bp downstream
Tssr36037	transcription start site region 36037	746 bp downstream
Tssr36038	transcription start site region 36038	1027 bp downstream