rs31030470 SNP Detail

Summary

• ID
  rs31030470
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:73373212 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATGGA GCTTTCCTCA TCATCGCGCT
  S
  TTTGCTGGCA GGACTGTAGC AGAGG                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	C57BL/6J	DBA/2J	LG/J	SM/J
ss46472244	mCV22545004	ABI	CRAMUS_MOUSE	f	SNP	C	C	G
ss134206809	ENSMUSSNP5053106	ENSEMBL	ENSEMBL_Sanger	f	SNP			G
ss325896822	CHEV_X_71574945	CHEVERUD	SCREENING_POP	f	SNP				G	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	C57BL/6J	DBA/2J	LG/J	SM/J
rs31030470					SNP	C	C	G	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:73373212 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22797	CpG island 22797	314 bp distal
Gm39520	predicted gene, 39520	848 bp upstream
Plxna3	plexin A3	within coordinates
Rr692009	regulatory region 692009	859 bp distal
Rr692010	regulatory region 692010	530 bp distal
Rr692011	regulatory region 692011	within coordinates
Tssr161342	transcription start site region 161342	530 bp downstream